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abstract

Seminar on
Atomistic Simulations of "Raft" like Nano-Domains in Lipid Bilayers
by
Sagar A. Pandit
Illinois Institute of Technology

Friday, 18 June 2004, 4:00 PM
Sir C. V. Raman Auditorium, Department of Physics

Abstract It is known from experimental studies that lipid bilayers composed of unsaturated phospholipids, sphingomyelin and cholesterol contain microdomains rich in sphingomyelin and cholesterol. These domains exhibit similar characteristics as "rafts" isolated from cell membranes, although the latter are much smaller in lateral size. Such domain formation can be a result of very specific and subtle lipid-lipid interactions. In order to identify and study these interactions, we have performed two molecular dynamics simulations for 150 ns in duration of Dioleylposphatidylcholine (DOPC), sphingomyelin (SM) and cholesterol (CHOL) systems, a 1:1:1 mixture of DOPC:SM:CHOL, and a 1:1 mixture of DOPC:SM. The simulations show the onset of spontaneous phase separated domains in the systems. On the simulation time scale cholesterol favors a position at the interface between the ordered SM region and the disordered DOPC region in the ternary system and accelerates the process of domain formation. We find that the smooth alpha–face of CHOL preferentially packs next to SM molecules. Based on a comparative analysis of interaction energies, we find that CHOL molecules do not show a preference for SM or DOPC. We conclude that CHOL molecules assist in the process of domain formation and the process is driven by entropic factors rather than differences in interaction energies.

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